The cryptic but very useful parameter k has been renamed to digits to
improve its discoverability.
To be consistent, contingency_table() gains alternative parameter, which
defaults to two-sided alternative hypothesis.
{afex} and {PMCMRplus}.R 4.1 because a critical
dependency ({pbkrtest}) requires this R version.{statsExpressions} get a new
statsExpressions class and a print method for this class.tidy_model_parameters() no longer removes columns which contain only missing
values.
Wilcox tests no longer provide exact p-values.
centrality_description() gets a new conf.level parameter.
Updates tests and examples to insure against removal of suggested packages.
{effectsize} package update.tidy_model_expressions() now returns a NULL instead of an expression
with empty strings.pairwise_comparisons() function to carry out pairwise comparison tests
for one-way designs.Expressions with statistical details were sometimes in a column named
label, while other times in expression column. Now it will be
consistently in the expression column.
Additionally, glue expressions were stored parsed in some data frame outputs, while unparsed in others. Now it is consistently parsed.
The top.text parameter has been removed from all functions. It was
relevant only in the context of {ggstatsplot} package. As that package no
longer uses it, it is no longer necessary to retain it.
{insight} package update.format_num() has been removed in favor of insight::format_value().expr_template() has been renamed to more informative
add_expression_col() function and has a different API. It returns a
dataframe with the additional expression column instead of just the
expression.A number of effect size estimates and their confidence intervals have
changed due to respective changes made in {effectsize} package version
0.5 release. For full details of these changes, see:
https://easystats.github.io/effectsize/news/index.html
centrality_description() function added to describe distribution for each
level of a grouping variable and create an expression describing a
centrality measure.
tidy_model_expressions() to create
expressions for dataframes containing tidied results from regression model
objects.Removes the redundant bf_extractor function. The tidy_model_parameters
does the same thing.
Exports more utility functions (long_to_wide_converter, format_num,
stats_type_switch) to get rid of reliance on ipmisc package.
To be consistent with the expressions, the dataframe for Bayesian analysis now also contain log of Bayes Factor values.
The tidy_model_effectsize() function is no longer exported as it is
helpful only for the internal workings of the package.
Given that these values can be really high, the statistic values for non-parametric tests were shown on a log scale, but this is a highly non-standard practice that has caused a lot of confusion among users. In light of this feedback, the functions no longer return these values on a log scale but in a scientific notation to keep the statistical expressions short.
VR_dilemma dataset, which lacked enough variation to be a good
dataset to use in examples or tests.There is a new JOSS paper about {statsExpressions} package!!
https://joss.theoj.org/papers/10.21105/joss.03236
The effect size for independent trimmed means two-sample test has been changed from explanatory measure of effect size to AKP's delta, which is easier to understand and interpret since its a robust cousin of Cohen's d.
one_sample_test and two_sample_test gain alternative argument to
specify alternative hypothesis (#86).
Cohen's d and Hedge's g use non-pooled standard deviation (cf. https://psyarxiv.com/tu6mp/).
effectsize package).expr_* functions.effectsize.This is the first stable release of {statsExpressions}!
There is good news and there is bad news that accompanies this milestone.
The bad news: The API for the package has changed completely: All
functions return a dataframe, and not an expression, as a default. The
expression is contained in a list column in the dataframe itself. So, to
salvage your functions from breaking, you will have to add
$expression[[1]] to your function calls. For example, if you were using
the function expr_t_onesample(), you will now have to specify
expr_t_onesample()$expression[[1]], so on and so forth. But, in general,
the advice is to not use any of the expr_* functions, which are
vestigial names for new avatars of these function and will be removed in
future. The new names are more intuitive, e.g., expr_t_onesample() is now
called one_sample_test(), etc.
The good news: There will not be any new changes to any of the current functions, except for any change necessary for maintenance or bug squashing. Well, to be more precise, this is true only for the functions that have "stable" badge.
BUG FIXES
grouped-tibble, the function internally
ungroups this (#79).afex has moved from Imports to Suggests.tr = 0.1 to tr = 0.2 (which is what WRS2 defaults to).expr_template gains a new argument bayesian, which can return an
expression for Bayesian analysis, which has a slightly different template.
Additionally, it has changed its conventions about the column names it
expects.
Retires the additional caption-making functionality that was unique to
expr_meta_random when type = "parametric". This was the only context in
which this feature was supported and was therefore inconsistent with the
rest of the package API.
Removes tidy_model_performance function, which is no longer used
internally.
Removes column containing log values of Bayes Factor as they are relevant
only for expressions.
All meta-analysis packages move from Imports to Suggests to reduce the
installation time for the user.
All robust tests in this package were based on trimmed means, except for
correlation test. This has been changed: the robust correlation measure is
now Winsorized correlation, which is based on trimming. Therefore, the
beta argument has been replaced by tr argument. This should result only
in minor changes in correlation coefficient estimates.
To be consistent with ggstatsplot's overall syntax philosophy the type
argument can be used to specify which type of statistical approach is to be
used for all functions.
t_parametric, t_nonparametric, t_robust, t_bayes are now removed
in favor of a single function two_sample_test.
expr_anova_parametric, expr_anova_nonparametric, expr_anova_robust,
expr_anova_bayes are now removed in favor of a single function
oneway_anova.
{statsExpressions} no longer internally relies on tidyBF. All Bayesian
analysis is carried out in this package itself. This was done to make the
maintenance of this package easier and helps with some major internal code
refactoring. As such, all re-exported functions from tidyBF have also been
removed.BUG FIXES
contingency_table ignored ratio argument while computing Cramer's V
for one-sample test. This is fixed.All non-parametric functions now use effectsize package to compute effect
sizes and not rcompanion. This would lead to some changes in effect sizes
and their confidence intervals reported by the respective functions.
Package internally relies on afex instead of ez for within-subjects
ANOVA.
expr_template gains paired argument.Internal refactoring to catch up with changes made to effectsize. Tests
are adapted to these changes as well.
Adds two new helper functions: tidy_model_parameters and
tidy_model_performance to toggle between easystats and tidymodels
naming conventions.
Drops broomExtra from dependencies in favor of parameters +
performance.
Removes the unused and vestigial Titanic_full dataset.
Removes the alias expr_onesample_proptest.
The expr_template function retires effsize.df argument. Now all details
need to be entered only in data.
All meta-analyses are now carried out using expr_meta_random and the
individual functions have been removed.
All effect sizes for contingency tabs are now calculated via effectsize
instead of rcompanion. This would lead to slight differences in effect
sizes and their CIs but the computations will be faster. Additionally, the
lower bound will never be negative and will be restricted to [0,1].
contingency_table function has been made less robust. It now fails instead
of returning NULL when it is not supposed to work. This is done to be
consistent with the other functions in the package which also fail instead
of returning NULL.
expr_anova_parametric always applies sphericity correction for p-values
for repeated measures ANOVA.
expr_anova_parametric retires non-partial variants of effect sizes
(eta-squared and omega-squared, i.e.) for parametric analyses.
The t-test and ANOVA tests get subject.id argument relevant for repeated
measures design.
Retires the vestigial stat.title argument. It was originally intended to
give more info on the tests, but now the expressions themselves contain
these details.
For paired ANOVA designs, partial = TRUE is recognized by effect sizes.
Retires bias.correct argument for contingency table analysis. It is rarely
justifiable to use the biased version of Cramer's V.
Adapts tests to changes made in the correlation package.
Subtitles for correlation tests make clear the type of statistic.
Small p-values (< 0.001) are now shown in scientific format.
Adapts to changes made in tidyBF package.
Re-exports correlation::correlation needed for ggstatsplot.
The t_nonparametric subtitle now clarifies whether it's a Wilcoxon test or
a Mann-Whitney test.
Thanks to Sarah, the package has a hexsticker. :)
Confidence intervals for Spearman's rho are computed using correlation
instead of rcompanion.
All relevant functions get rid of messages argument as the functions no
longer print a message when bootstrapped CIs are used.
The effect size measure for paired robust t-test is now changed to robust (trimmed-Winsorized) standardized difference similar to Cohen's d.
BUG FIXES
0.4.0 release for expr_anova_parametric:
changing conf.level doesn't work and function defaults to 0.90 CIs
(#32).Removes the experimental corr_objects function.
tidyBF
package and are re-exported from there.Minimum R version bumped to R 3.6.0.
Retires the internal effsize_t_parametric helper function in favor of
relying functions from effectsize, which is now added as a dependency.
Similarly, {statsExpressions} now relies on effectsize to compute effect
sizes for ANOVA designs, instead of sjstats.
For parametric t-tests and ANOVAs, confidence intervals for effect sizes are estimated using the noncentrality parameter method. Centrality-based methods are deprecated.
Correlation analysis is carried out using correlation package, which is
now added as a dependency.
corr_objects to reduce dependency load of
ggstatsplot. This is an experimental function and should be avoided until
it stabilizes.expr_meta_bayes.expr_meta_parametric,
expr_meta_robust, bf_meta.expr_template function now expects two dataframes: data and effsize.df
that contain the details needed for creating expressions instead of
providing each individual values. This makes the function more friendly work
with using modeling packages like broom.Minor tweaks to how widehat is displayed in some of the expressions.
Removes MCMCpack from Depends.
^ on top to signify that these are
estimates.CRAN.Fixing tests for the new release of rcompanion dependency.